首站-论文投稿智能助手
典型文献
Comparative mitochondrial genome analysis of Sesarmidae and its phylogenetic implications
文献摘要:
Here, we sequenced the complete mitogenome of Parasesarma eumolpe (Brachyura: Grapsoidea: Sesarmidae) forthe first time. The characteristics of this newly sequenced mitogenome were described and compared with otherSesarmidae species. The 15646-bp mitogenome contains 13 protein-coding genes (PCGs), two ribosomal RNAgenes (rRNAs), 22 transfer RNA genes (tRNAs), and an A-T rich region. All of the PCGs are initiated by the startcodon ATN and terminated by the standard TAN codon or an incomplete T. The pairwise Ka/Ks ratio analysisshows that all 13 PCGs are under purifying selection, whereas the ATP8 gene is an outlier, with pairwisecomparison values ranging from neutral selection (0.000) to positive selection (1.039). The gene arrangement of P.eumolpe compared with ancestral Decapoda shows the translocation of two tRNAs (tRNA-His and tRNA-Gln),which is identical to other Sesarmidae species. Phylogenetic analyses show that all Sesarmidae species are placedinto one group, and the polyphyly of Eriphioidea, Ocypodoidea, and Grapsoidea is well supported. Therelationship between gaps in the QIM region and the phylogeny of Sesarmidae is analyzed. It is obvious that boththe G5 (the gap between Q and I) and G6 (the gap between I and M) decrease progressively with the evolutionprocess. These results will help to better understand the genomic evolution within Sesarmidae and provideinsights into the phylogeny of Brachyura.
文献关键词:
作者姓名:
Ying Zhang;Lei Meng;Liming Wei;Bingjian Liu;Liqin Liu;Zhenming Lü;Yang Gao;Li Gong
作者机构:
National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan 316022, China;Marine Science and Technology College, Zhejiang Ocean University, Zhoushan 316022, China;School of Fishery, Zhejiang Ocean University, Zhoushan 316022, China
引用格式:
[1]Ying Zhang;Lei Meng;Liming Wei;Bingjian Liu;Liqin Liu;Zhenming Lü;Yang Gao;Li Gong-.Comparative mitochondrial genome analysis of Sesarmidae and its phylogenetic implications)[J].海洋学报(英文版),2022(08):62-73,中插7-中插21
A类:
Sesarmidae,Parasesarma,eumolpe,Grapsoidea,otherSesarmidae,RNAgenes,startcodon,analysisshows,pairwisecomparison,placedinto,polyphyly,Eriphioidea,Ocypodoidea,Therelationship,QIM,boththe,evolutionprocess,provideinsights
B类:
Comparative,mitochondrial,its,phylogenetic,implications,Here,sequenced,mitogenome,Brachyura,forthe,first,characteristics,this,newly,were,described,compared,species,bp,contains,protein,coding,PCGs,two,ribosomal,rRNAs,transfer,tRNAs,rich,region,All,initiated,by,ATN,terminated,standard,TAN,incomplete,Ka,Ks,ratio,that,all,purifying,selection,whereas,ATP8,outlier,values,ranging,from,neutral,positive,arrangement,ancestral,Decapoda,translocation,His,Gln,which,identical,Phylogenetic,analyses,one,group,well,supported,between,gaps,phylogeny,analyzed,It,obvious,G5,G6,decrease,progressively,These,results,will,help,better,understand,genomic,within
AB值:
0.423546
相似文献
Characterization of Amphidinium (Amphidiniales, Dinophyceae) species from the China Sea based on morphological, molecular, and pigment data
Zhaohe LUO;Hua ZHANG;Qun LI;Lei WANG;Hala F MOHAMED;Songhui Lü;Haifeng GU-Third Institute of Oceanography,Ministry of Natural Resources,Xiamen 361005,China;Research Center of Harmful Algae and Marine Biology,College of Life Science and Technology,Jinan University,Guangzhou 510362,China;Shenzhen Academy of Environmental Science,Shenzhen 510008,China;Botany&Microbiology Department,Faculty of Science,Al-Azhar University(Girls Branch),Cairo 11751,Egypt;Southern Marine Science and Engineering Guangdong Laboratory,Zhuhai 519000,China;Observation and Research Station of Coastal Wetland Ecosystem in Beibu Gulf,Ministry of Natural Resources,Beihai 536015,China
Morphological analysis of Rhynchospio aff. asiatica (Annelida: Spionidae) and comments on the phylogeny and reproduction of the family Spionidae
Zhi WANG;Ting XU;Jian-Wen QIU;Yinglu JI;Zishan YU;Caihuan KE-State Key Laboratory of Marine Environmental Science,College of Ocean and Earth Sciences,Xiamen University,Xiamen 361102,China;Department of Ocean Science and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory(Guangzhou),Hong Kong University of Science and Technology,Hong Kong 999077,China;Southern Marine Science and Engineering Guangdong Laboratory(Guangzhou),Guangzhou 511458,China;Department of Biology and Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory(Guangzhou),Hong Kong Baptist University,Hong Kong 999077,China;North China Sea Marine Forecasting Center of State Oceanic Administration,Qingdao 266061,China;College of Marine Life Sciences,Ocean University of China,Qingdao 266003,China
机标中图分类号,由域田数据科技根据网络公开资料自动分析生成,仅供学习研究参考。